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Information on EC 1.3.1.42 - 12-oxophytodienoate reductase and Organism(s) Solanum lycopersicum and UniProt Accession Q9XG54

for references in articles please use BRENDA:EC1.3.1.42
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EC Tree
IUBMB Comments
Involved in the conversion of linolenate into jasmonate in Zea mays.
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This record set is specific for:
Solanum lycopersicum
UNIPROT: Q9XG54
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Word Map
The taxonomic range for the selected organisms is: Solanum lycopersicum
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota
Synonyms
12-oxophytodienoate reductase, 12-oxo-phytodienoic acid reductase, csopr3, osopr7, opda reductase, taopr1, 12-oxophytodienoate reductase 3, osopr8, oprii, 12-oxophytodienoate-10,11-reductase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
12-oxophytodienoate reductase
-
12-oxophytodienoate reductase 1
-
phytodienoic acid reductase
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12-oxo-phytodienoic acid reductase
-
-
-
-
12-oxophytodienoate reductase
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12-oxophytodienoate reductase 3
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phytodienoic acid reductase
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
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oxidation
-
-
-
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reduction
SYSTEMATIC NAME
IUBMB Comments
8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate:NADP+ 4-oxidoreductase
Involved in the conversion of linolenate into jasmonate in Zea mays.
CAS REGISTRY NUMBER
COMMENTARY hide
101150-03-2
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
(15Z)-12-oxophyto-10,15-dienoate + NADPH
8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
-
-
-
?
(2E)-3,7-dimethylocta-2,6-dienal + NADH
(3S)-3,7-dimethyloct-6-enal + NAD+
show the reaction diagram
above 99% conversion with OPR-1
-
-
?
(2E)-3,7-dimethylocta-2,6-dienal + NADPH
(3S)-3,7-dimethyloct-6-enal + NADP+
show the reaction diagram
above 99% conversion with OPR-1
-
-
?
(2Z)-2-methylbut-2-enedioic acid + NADH
(2R)-2-methylbutanedioic acid + NAD+
show the reaction diagram
above 99% conversion with OPR-1
-
-
?
(2Z)-2-methylbut-2-enedioic acid + NADPH
(2R)-2-methylbutanedioic acid + NADP+
show the reaction diagram
above 99% conversion with OPR-1
-
-
?
(9R,13R)-(15Z)-12-oxophyto-10,15-dienoate + NADPH
(9R,13R)-8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
-
-
-
?
(9S,13S)-12-oxo-phytodienoic acid + NADPH + H+
3-oxo-2((2Z)-pentenyl)-cyclopentane-1-octanoic acid + NADP+
show the reaction diagram
enzyme is a FMN-dependent oxidoreductase that catalyzes the reduction of the cyclopentenone (9S,13S)-12-oxophytodienoate to the corresponding cyclopentanone in the biosynthesis of the plant hormone jasmonic acid
-
-
?
12-oxo-cis-phythodienoic acid + NADPH
cis-3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid + NADP+
show the reaction diagram
-
-
-
?
2,6,6-trimethylcyclohex-2-ene-1,4-dione + NADH
(6R)-2,2,6-trimethylcyclohexane-1,4-dione + NAD+
show the reaction diagram
above 98% conversion with OPR-1
-
-
?
2,6,6-trimethylcyclohex-2-ene-1,4-dione + NADPH
(6R)-2,2,6-trimethylcyclohexane-1,4-dione + NADP+
show the reaction diagram
above 98% conversion with OPR-1
-
-
?
2-methylcyclopent-2-en-1-one + NADH
(2S)-2-methylcyclopentanone + NAD+
show the reaction diagram
58% conversion with OPR-1
-
-
?
2-methylcyclopent-2-en-1-one + NADPH
(2S)-2-methylcyclopentanone + NADP+
show the reaction diagram
45% conversion with OPR-1
-
-
?
3-methyl-1-phenyl-1H-pyrrole-2,5-dione + NADH
(3R)-3-methyl-1-phenylpyrrolidine-2,5-dione + NAD+
show the reaction diagram
99% conversion with OPR-1
-
-
?
3-methyl-1-phenyl-1H-pyrrole-2,5-dione + NADPH
(3R)-3-methyl-1-phenylpyrrolidine-2,5-dione + NADP+
show the reaction diagram
99% conversion with OPR-1
-
-
?
[(E)-1-methyl-2-nitroethenyl]benzene + NADH + H+
[(1R)-1-methyl-2-nitroethyl]benzene + NAD+
show the reaction diagram
above 99% conversion with OPR-1
-
-
?
[(E)-1-methyl-2-nitroethenyl]benzene + NADPH + H+
[(1R)-1-methyl-2-nitroethyl]benzene + NADP+
show the reaction diagram
above 99% conversion with OPR-1
-
-
?
(15Z)-12-oxophyto-10,15-dienoate + NADPH
8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
-
-
-
?
(2E)-3,7-dimethylocta-2,6-dienal + NADH
(3S)-3,7-dimethyloct-6-enal + NAD+
show the reaction diagram
90% conversion with OPR-3
-
-
?
(2E)-3,7-dimethylocta-2,6-dienal + NADPH
(3S)-3,7-dimethyloct-6-enal + NADP+
show the reaction diagram
90% conversion with OPR-3
-
-
?
(9R,13R)-(15Z)-12-oxophyto-10,15-dienoate + NADPH
(9R,13R)-8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
(9S,13S)-(15Z)-12-oxophyto-10,15-dienoate + NADPH
(9S,13S)-8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
(9S,13S)-12-oxo-phytodienoic acid + NADPH
3-oxo-2((2Z)-pentenyl)-cyclopentane-1-octanoic acid + NADP+
show the reaction diagram
-
-
-
?
(9S,13S)-12-oxo-phytodienoic acid + NADPH + H+
?
show the reaction diagram
FMN-dependent oxidoreductase, biosynthesis of the plant hormone jasmonic acid, the enzyme in plants relates to old yellow enzyme (OYE) from Saccharomyces cerevisiae
-
-
?
(9S,13S)-12-oxophytodienoate + NADPH
3-oxo-2((2Z)-pentenyl)-cyclopentane-1-octanoic acid + NADP+
show the reaction diagram
-
-
-
?
12-oxo-cis-phythodienoic acid + NADPH
cis-3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid + NADP+
show the reaction diagram
-
-
-
?
2,6,6-trimethylcyclohex-2-ene-1,4-dione + NADH
(6R)-2,2,6-trimethylcyclohexane-1,4-dione + NAD+
show the reaction diagram
77% conversion with OPR-3
-
-
?
2,6,6-trimethylcyclohex-2-ene-1,4-dione + NADPH
(6R)-2,2,6-trimethylcyclohexane-1,4-dione + NADP+
show the reaction diagram
78% conversion with OPR-3
-
-
?
2-methylcyclopent-2-en-1-one + NADH
(2S)-2-methylcyclopentanone + NAD+
show the reaction diagram
19% conversion with OPR-3
-
-
?
2-methylcyclopent-2-en-1-one + NADPH
(2S)-2-methylcyclopentanone + NADP+
show the reaction diagram
27% conversion with OPR-3
-
-
?
3-methyl-1-phenyl-1H-pyrrole-2,5-dione + NADH
(3R)-3-methyl-1-phenylpyrrolidine-2,5-dione + NAD+
show the reaction diagram
99% conversion with OPR-3
-
-
?
3-methyl-1-phenyl-1H-pyrrole-2,5-dione + NADPH
(3R)-3-methyl-1-phenylpyrrolidine-2,5-dione + NADP+
show the reaction diagram
99% conversion with OPR-3
-
-
?
3-methylcyclopent-2-en-1-one + NADH
(3S)-3-methylcyclopentanone + NAD+
show the reaction diagram
2% conversion with OPR-3
-
-
?
3-methylcyclopent-2-en-1-one + NADPH
(3S)-3-methylcyclopentanone + NADP+
show the reaction diagram
1% conversion with OPR-3
-
-
?
3-oxo-2((2Z)-pentenyl)-cyclopentane-1-octanoic acid + NADP+
?
show the reaction diagram
in vitro, OPR3 reduces the jasmonic acid precursor (9S,13S)-12-oxophytodienoate as well as the enantiomeric (9R,13R)-12-oxophytodienoate, while its isozyme OPR1 is highly selective, accepting only (9R,13R)-12-oxophytodienoate as a substrate, the enzyme in plants relates to old yellow enzyme (OYE) from Saccharomyces cerevisiae
-
-
?
oxylipin + NADPH
? + NADP+
show the reaction diagram
-
-
-
-
?
trans-hex-2-enal + NADPH
hexanal + NADP+
show the reaction diagram
-
-
-
?
[(E)-1-methyl-2-nitroethenyl]benzene + NADH + H+
[(1S)-1-methyl-2-nitroethyl]benzene + NAD+
show the reaction diagram
69% conversion with OPR-3
-
-
?
[(E)-1-methyl-2-nitroethenyl]benzene + NADPH + H+
[(1S)-1-methyl-2-nitroethyl]benzene + NADP+
show the reaction diagram
72% conversion with OPR-3
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
(15Z)-12-oxophyto-10,15-dienoate + NADPH
8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
-
-
-
?
(9R,13R)-(15Z)-12-oxophyto-10,15-dienoate + NADPH
(9R,13R)-8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
-
-
-
?
(9S,13S)-12-oxo-phytodienoic acid + NADPH + H+
3-oxo-2((2Z)-pentenyl)-cyclopentane-1-octanoic acid + NADP+
show the reaction diagram
enzyme is a FMN-dependent oxidoreductase that catalyzes the reduction of the cyclopentenone (9S,13S)-12-oxophytodienoate to the corresponding cyclopentanone in the biosynthesis of the plant hormone jasmonic acid
-
-
?
(9S,13S)-(15Z)-12-oxophyto-10,15-dienoate + NADPH
(9S,13S)-8-[(1R,2R)-3-oxo-2-((Z)-pent-2-enyl)cyclopentyl]octanoate + NADP+
show the reaction diagram
product is the direct precursor in the jasmonate biosynthesis
-
-
?
(9S,13S)-12-oxo-phytodienoic acid + NADPH + H+
?
show the reaction diagram
FMN-dependent oxidoreductase, biosynthesis of the plant hormone jasmonic acid, the enzyme in plants relates to old yellow enzyme (OYE) from Saccharomyces cerevisiae
-
-
?
3-oxo-2((2Z)-pentenyl)-cyclopentane-1-octanoic acid + NADP+
?
show the reaction diagram
in vitro, OPR3 reduces the jasmonic acid precursor (9S,13S)-12-oxophytodienoate as well as the enantiomeric (9R,13R)-12-oxophytodienoate, while its isozyme OPR1 is highly selective, accepting only (9R,13R)-12-oxophytodienoate as a substrate, the enzyme in plants relates to old yellow enzyme (OYE) from Saccharomyces cerevisiae
-
-
?
oxylipin + NADPH
? + NADP+
show the reaction diagram
-
-
-
-
?
additional information
?
-
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADPH
NADPH
additional information
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
p-Hydroxybenzaldehyde
-
p-Hydroxybenzaldehyde
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
14
trans-hex-2-enal
-
additional information
additional information
-
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
OPR1_SOLLC
376
0
42415
Swiss-Prot
other Location (Reliability: 2)
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
monomer
additional information
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
OPR1:p-hydroxybenzaldehyde complex at 2.3 A resolution, determination of the crystal structures of OPR1 in complex with the ligand p-hydroxybenzaldehyde, structural comparison with the OPR1:(9R,13R)-12-oxophytodienoate complex and further biochemical and mutational analyses reveals that 2 active-site residues, Tyr78 and Tyr246 in OPR1 are critical for substrate filtering
at 2.0 A resolution, determination of the crystal structures of OPR3 in complex with the ligand p-hydroxybenzaldehyde, structural comparison with the OPR1:(9R,13R)-12-oxophytodienoate complex and further biochemical and mutational analyses reveals that 2 active-site residues, Phe74 and His244 in OPR3 are critical for substrate filtering
native enzyme and mutants E291L and Y364F. Wild-type enzyme crystallizes as an extraordinary self-inhibiting dimer, dimerization is actively driven by the mutual binding of the two L6 loops into the two active sites
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
E291L
sixfold faster turnover than wild-type. Crystallization in same space group as wild-type, but with strikingly different cell constants. Appears as monomer in the crystal
F74Y
OPR3 mutant, change in substrate specificity, similar increase in stereoselectivity is observed for the mutant as compared to the wild-type enzyme
F74Y/H244Y
OPR3 double-mutant, reduction of (9S,13S)-12-oxo-phytodienoic acid is slower in the double-mutant as in the wild type enzyme and the single mutants, the protein crystallizes as a monomer with none of the dimer interactions retain
H244Y
OPR3 mutant, change in substrate specificity, similar increase in stereoselectivity is observed for the mutant as compared to the wild-type enzyme
Y364F
crystallization as a monomer with none of the dimer interactions retained
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant His-tagged isozyme OPR1 from Escherichia coli by nickel affinity chromatography
recombinant His-tagged isozyme OPR2 from Escherichia coli by nickel affinity chromatography
recombinant His-tagged isozyme OPR3 from Escherichia coli by nickel affinity chromatography
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in Escherichia coli BL21
expression of His-tagged isozyme OPR1 in Escherichia coli, transient expression of isozyme OPR1 as enhanced-GFP- or RFP-fusion protein in onion epidermal cells for subcellular localization study
expression of His-tagged isozyme OPR2 in Escherichia coli
expression of His-tagged isozyme OPR3 in Escherichia coli, transient expression of isozyme OPR3 as enhanced-GFP- or RFP-fusion protein in onion epidermal cells for subcellular localization study
OPR3 mutant enzymes are expressed in Escherichia coli
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Breithaupt, C.; Strassner, J.; Breitinger, U.; Huber, R.; Macheroux, P.; Schaller, A.; Clausen, T.
X-ray structure of 12-oxophytodienoate reductase 1 provides structural insight into substrate binding and specificity within the family of OYE
Structure
9
419-429
2001
Solanum lycopersicum
Manually annotated by BRENDA team
Strassner, J.; Schaller, F.; Frick, U.B.; Howe, G.A.; Weiler, E.W.; Amrhein, N.; Macheroux, P.; Schaller, A.
Characterization and cDNA-microarray expression analysis of 12-oxophytodienoate reductases reveals differential roles for octadecanoid biosynthesis in the local versus the systemic wound response
Plant J.
32
585-601
2002
Arabidopsis thaliana, Solanum lycopersicum (Q9FEW9), Solanum lycopersicum (Q9FEX0), Solanum lycopersicum (Q9XG54)
Manually annotated by BRENDA team
Breithaupt, C.; Kurzbauer, R.; Lilie, H.; Schaller, A.; Strassner, J.; Huber, R.; Macheroux, P.; Clausen, T.
Crystal structure of 12-oxophytodienoate reductase 3 from tomato: self-inhibition by dimerization
Proc. Natl. Acad. Sci. USA
103
14337-14342
2006
Solanum lycopersicum (Q9FEW9), Solanum lycopersicum
Manually annotated by BRENDA team
Hall, M.; Stueckler, C.; Kroutil, W.; Macheroux, P.; Faber, K.
Asymmetric bioreduction of activated alkenes using cloned 12-oxophytodienoate reductase isoenzymes OPR-1 and OPR-3 from Lycopersicon esculentum (tomato): a striking change of stereoselectivity
Angew. Chem.
46
3934-3937
2007
Solanum lycopersicum (Q9FEW9), Solanum lycopersicum (Q9XG54), Solanum lycopersicum
Manually annotated by BRENDA team
Breithaupt, C.; Kurzbauer, R.; Schaller, F.; Stintzi, A.; Schaller, A.; Huber, R.; Macheroux, P.; Clausen, T.
Structural basis of substrate specificity of plant 12-oxophytodienoate reductases
J. Mol. Biol.
392
1266-1277
2009
Solanum lycopersicum (Q9FEW9), Solanum lycopersicum (Q9XG54)
Manually annotated by BRENDA team
Kudisch, B.; Oblinsky, D.G.; Black, M.J.; Zieleniewska, A.; Emmanuel, M.A.; Rumbles, G.; Hyster, T.K.; Scholes, G.D.
Active-site environmental factors customize the photophysics of photoenzymatic old yellow enzymes
J. Phys. Chem. B
124
11236-11249
2020
Solanum lycopersicum (Q9XG54)
Manually annotated by BRENDA team