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Information on EC 1.2.5.1 - pyruvate dehydrogenase (quinone) and Organism(s) Escherichia coli and UniProt Accession P07003

for references in articles please use BRENDA:EC1.2.5.1
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IUBMB Comments
Flavoprotein (FAD) . This bacterial enzyme is located on the inner surface of the cytoplasmic membrane and coupled to the respiratory chain via ubiquinone [2,3]. Does not accept menaquinone. Activity is greatly enhanced by lipids [4,5,6]. Requires thiamine diphosphate . The enzyme can also form acetoin .
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This record set is specific for:
Escherichia coli
UNIPROT: P07003
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Word Map
The taxonomic range for the selected organisms is: Escherichia coli
The expected taxonomic range for this enzyme is: Bacteria, Archaea
Synonyms
pyruvate:quinone oxidoreductase, poxec, pyruvate oxidase b, ubiquinone-dependent pyruvate oxidase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
EC 1.2.2.2
-
formerly
pyruvate oxidase
pyruvate oxidase B
-
-
pyruvate:ubiquinone-8-oxidoreductase
-
-
ubiquinione-dependent pyruvate oxidase
-
-
ubiquinone-dependent pyruvate oxidase
-
-
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
pyruvate + ubiquinone + H2O = acetate + CO2 + ubiquinol
show the reaction diagram
enzyme also catalyzes the formation of acetoin from pyruvate and acetaldehyde
-
PATHWAY SOURCE
PATHWAYS
-
-, -
SYSTEMATIC NAME
IUBMB Comments
pyruvate:ubiquinone oxidoreductase
Flavoprotein (FAD) [1]. This bacterial enzyme is located on the inner surface of the cytoplasmic membrane and coupled to the respiratory chain via ubiquinone [2,3]. Does not accept menaquinone. Activity is greatly enhanced by lipids [4,5,6]. Requires thiamine diphosphate [7]. The enzyme can also form acetoin [8].
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
pyruvate + ferricyanide + H2O
acetate + CO2 + ferrocyanide
show the reaction diagram
-
-
-
?
pyruvate + ubiquinone-8 + H2O
acetate + CO2 + ubiquinol-8
show the reaction diagram
-
-
-
?
pyruvate + dimethylmenoquinone + H2O
acetate + CO2 + dimethylmenoquinol
show the reaction diagram
-
-
-
-
?
pyruvate + ferricyanide
acetate + CO2 + ferrocyanide
show the reaction diagram
-
activity assayed photometrically by monitoring the reduction of 2,6-dichloroindophenol
-
-
?
pyruvate + ferricyanide + H2O
acetate + CO2 + ferrocyanide
show the reaction diagram
pyruvate + ferricytochrome b1 + H2O
acetate + CO2 + ferrocytochrome b1
show the reaction diagram
pyruvate + menaquinone + H2O
acetate + CO2 + menaquinol
show the reaction diagram
-
-
-
-
?
pyruvate + oxidized 2,6-dichloroindophenol + H2O
acetate + CO2 + reduced 2,6-dichloroindophenol
show the reaction diagram
-
-
-
-
?
pyruvate + ubiquinol-6 + H2O
acetate + CO2 + ubiquinol-6
show the reaction diagram
-
the natural electron acceptor for the reduced enzyme is a cell-membrane-associated electron transport system including both ubiquinone-6 and cytochrome b1, with oxygen being the terminal electron acceptor
-
-
?
pyruvate + ubiquinone + H2O
acetate + CO2 + ubiquinol
show the reaction diagram
-
-
-
-
?
pyruvate + ubiquinone-30 + H2O
acetate + CO2 + ubiquinol-30
show the reaction diagram
-
ubiquinone-30 is rapidly reduced by pyruvate oxidase only in the presence of palmitic acid
-
-
?
pyruvate + ubiquinone-6 + H2O
acetate + CO2 + ubiquinol-6
show the reaction diagram
-
-
-
-
?
pyruvate + ubiquinone-8
acetate + CO2 + ubiquinol-8
show the reaction diagram
pyruvate + ubiquinone-8 + H2O
acetate + CO2 + ubiquinol-8
show the reaction diagram
-
-
-
-
?
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
pyruvate + ubiquinone-8 + H2O
acetate + CO2 + ubiquinol-8
show the reaction diagram
-
-
-
?
pyruvate + ferricytochrome b1 + H2O
acetate + CO2 + ferrocytochrome b1
show the reaction diagram
pyruvate + ubiquinol-6 + H2O
acetate + CO2 + ubiquinol-6
show the reaction diagram
-
the natural electron acceptor for the reduced enzyme is a cell-membrane-associated electron transport system including both ubiquinone-6 and cytochrome b1, with oxygen being the terminal electron acceptor
-
-
?
pyruvate + ubiquinone + H2O
acetate + CO2 + ubiquinol
show the reaction diagram
-
-
-
-
?
pyruvate + ubiquinone-6 + H2O
acetate + CO2 + ubiquinol-6
show the reaction diagram
-
-
-
-
?
pyruvate + ubiquinone-8
acetate + CO2 + ubiquinol-8
show the reaction diagram
pyruvate + ubiquinone-8 + H2O
acetate + CO2 + ubiquinol-8
show the reaction diagram
-
-
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
thiamine diphosphate
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
anionic detergents
-
the enzyme activity is stimulated 20- to 50fold, if the enzyme is removed from the membrane particulate fraction of the cell by incubation with a wide variety of amphiphiles
Cationic detergents
-
the enzyme activity is stimulated 20- to 50fold, if the enzyme is removed from the membrane particulate fraction of the cell by incubation with a wide variety of amphiphiles
Mg2+
-
as cofactor
Mn2+
-
divalent metal ion required
Zwitterionic detergents
-
the enzyme activity is stimulated 20- to 50fold, if the enzyme is removed from the membrane particulate fraction of the cell by incubation with a wide variety of amphiphiles
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
cis-12-hydroxy-9-octadecenoic acid
-
119% of the activitation with palmitic acid
elaidic acid
-
122% of the activitation with palmitic acid
lauric acid
lecithin
-
the hydrophobic moieties of lecithin activate pyruvate oxidase whereas the hydrophilic portions of the molecule have no stimulatory effect
linoleic acid
-
116% of the activitation with palmitic acid
linolelaidic acid
-
113% of the activitation with palmitic acid
linolenic acid
-
126% of the activitation with palmitic acid
Lipids
-
enzyme is activated by lipids, high affinity binding site
-
lysophosphatidylethanolamine
-
highest stimulating activity among the phospholipid extracted from cell membranes tested, if the phospholipids are added directly to the assay mixtures. When water-soluble micellar preparations are substituted for direct addition of the phospholipid to the assay, all the phosphatides demonstrate higher specific activities for stimulating pyruvate oxidase, and the differences in their stimulating capacity are minimized
myristic acid
-
109% of the activitation with palmitic acid
n-nonanoic acid
-
42% of the activitation with palmitic acid
oleic acid
palmitic acid
palmitoleic acid
-
137% of the activitation with palmitic acid
trans-12-hydroxy-9-octadecenoic acid
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103% of the activitation with palmitic acid
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
60 - 883
ferricyanide
167
pyruvate
-
pH and temperature not specified in the publication
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
270
-
270 micromol of ferricyanide min-1 mg-1 of flavoprotein subunit, 25°C, pH not specified in the publication
additional information
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
UniProt
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
the pyruvate oxidase system and the electron transport system are associated with the cell envelope-membrane fraction
Manually annotated by BRENDA team
-
cell membrane-associated
-
Manually annotated by BRENDA team
-
inner surface of the cytoplasmic membrane and is coupled to the Escherichia coli aerobic respiratory chain
-
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
240000
-
PAGE
265000
-
determined by the Archibald method
60000
-
the lauric acid-labeled enzyme is not digested neither by trypsin nor alpha-chymotrypsin in the presence of 0.1% SDS. Effective digestion is achieved by thermolysin, to a 45000 and a 15000 Da fragment
62000
-
4 * 62000, SDS-PAGE
62018
-
x * 62018, calculated
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
-
x * 62018, calculated
tetramer
-
4 * 62000, SDS-PAGE
additional information
-
when two poxB gene alleles coexist in cells either on a single plasmid or on two compatible plasmids, heterotetrameric species are formed in addition to homotetramers. The concentration of tetramer species varies according to the concentrations of the different subunit present. The distribution of each tetramer species seems virtually identical to those theoretically expected based on random mixing. The intrinsic activity of pyruvate oxidase is not affected by interactions among the four subunits. Each subunit of the tetramer catalyzes the oxidase reaction independently
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
the crystalline enzyme does not contain thiamine diphosphate but has an absolute thiamine diphosphate requirement for the reduction of the enzyme-bound FAD
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A533T
-
in native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities. A533T mobility is similar to wild-type, and slower than Y549Term
A553V
-
in native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities. A553V mobility is similar to wild-type, and slower than Y549Term
E564P
-
in native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities. E564P has the slowest mobilityamong the mutants tested
R572E
-
in native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities. R572E has the fastest mobility among the mutants tested
R572G
-
in native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities. R572G shows a midway mobility
R572K
-
in native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities. R572K mobility is similar to wild-type, and slower than Y549Term
R572Term
-
deletion of last amino acid. In native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities. R572Term shows a midway mobility
W570Term
-
deletion of last three amino acids. In native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities.. W570Term shows a midway mobility
Y549Term
-
deletion of last 24 amino acids. In native gel electrophoresis, mutant enzymes show differing electrophoretic mobilities.. Y549Term shows a midway mobility
additional information
-
expression of a truncated gene lacking the last 24 amino acids of the C-terminus, thus being closely analogous to the activated species produced in vitro by limited chymotrypsin cleavage. The truncated protein is fully active in vitro in the absence of lipid, and its activity is not further increased by addition of lipid activators. The truncated enzyme fails to bind Triton X-114. Strains producing the truncated protein are devoid of oxidase activity in vivo
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
DEAE-Sephadex, ammonium sulfate precipitation, dialysis
-
purified to homogeneity in the absence of detergents
-
the enzyme is purified from an Escherichia coli strain CG3 harboring a plasmid carrying a plasmid th eoxidase gene
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli BL21(DE3) cells
-
expressed in Escherichia coli strain CG3
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
enzyme expression is reduced anaerobically
-
systematical substitution of cysteine at 18 amino acid positions within the C-terminal region to obtain a panel of proteins each having a single residue changed to cysteine. In the absence of pyruvate, the cysteine residues of the modified PoxB proteins fail to form disulfide bonds, generally fail to react with a large and rigid hydrophilic sulfhydryl reagent, 4-acetamido-4'-[(iodoacetyl)amino]stilbene-2,2'-disulfonic acid (IASD), and in some cases react weakly with a smaller more hydrophobic reagent, N-ethylmaleimide. In this conformation, the C termini appear fixed in a rigid environment having limited exposure to solvent. In the presence of pyruvate, all of the C-terminal cysteine residues, except the two most distal from the C terminus, react with both sulfhydryl reagents and readily formed disulfide cross-linked species. In the presence of lipid activators, Triton X-100 or dipalmitoylphosphatidylglycerol, a subset of the cysteine-substituted proteins no longer reacts with the membrane-impermeable IASD reagent, indicating penetration of these protein segments into the lipid micelle
-
RENATURED/Commentary
ORGANISM
UNIPROT
LITERATURE
reconstitution of a minimal respiratory chain consisting of pyruvate oxidase and cytochrome d terminal oxidase plus ubiquinone8 incorporated in phospholipid vesicles. The catalytic velocity of the reconstituted liposome system is about 30% of that observed when the flavoprotein is reconstituted with Escherichia coli membranes
-
reconstitution of enzyme with a supported lipidic structure. The activated enzyme can be efficiently regulated by the oxidation level of the quinone pool in natural membranes
-
reconstitution of the native enzymatically active protein can be accomplished by incubating equimolar concentrations of apomonomers and FAD at pH 6.5. The second order reaction of apomonomers with FAD to form an initial monomer-FAD complex is fast. The rate-limiting step for enzymatic reactivation appears to be the folding of the polypeptide chain in the monomer-FAD complex to reconstitute the three-dimensional FAD binding site prior to subunit reassociation. The subsequent formation of native tetramers proceeds via an essentially irreversible dimer assembly pathway
-
removal of the lipids from the membrane particles by extraction with aqueous acetone or hydrolysis of the phospholipids by treatment with Bacillus cereus phospholipase C results in a complete loss of electron transport activity. Practically all the neutral lipids and 65% of the phospholipids are removed by this treatment. Phospholipase treatment results in a loss of 75% of the membrane phospholipid phosphorus. The diglycerides and the neutral lipids produced by phospholipase hydrolysis remain associated with the particles. Addition of neutral lipid and detergent hepta-D,L-alanyl-dodecylamide to the acetone-extracted material results in a restoration of 37% of the original particle activity. Addition of neutral lipid and hepta-DL-alanyl dodecylamide to phospholipase-treated particles completely restores the original electron transport activity. Addition of ubiquinone from either yeast or Escherichia coli will restore pyruvate oxidase activity when the quinones are supplemented with photoinactivated neutral lipid. No restoration of activity to phospholipase-treated particles is noted upon the addition of either menaquinone 6 or menaquinone 8 to the reconstitution system
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Blake, R.; Hager, L.P.
Activation of pyruvate oxidase by monomeric and micellar amphiphiles
J. Biol. Chem.
253
1963-1971
1978
Escherichia coli
Manually annotated by BRENDA team
Williams, F.R.; Hager, L.P.
A crystalline flavin pyruvate oxidase
J. Biol. Chem.
236
PC36-PC37
1961
Escherichia coli
Manually annotated by BRENDA team
Cunningham, C.C.; Hager, L.P.
Crystalline pyruvate oxidase from Escherichia coli. II. Activation by phospholipids
J. Biol. Chem.
246
1575-1582
1971
Escherichia coli
Manually annotated by BRENDA team
Neumann, P.; Weidner, A.; Pech, A.; Stubbs, M.T.; Tittmann, K.
Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli
Proc. Natl. Acad. Sci. USA
105
17390-17395
2008
Escherichia coli (P07003)
Manually annotated by BRENDA team
Kiuchi, K.; Hager, L.P.
Reconstitution of the lipid-depleted pyruvate oxidase system of Escherichia coli: the palmitic acid effect
Arch. Biochem. Biophys.
233
776-784
1984
Escherichia coli
Manually annotated by BRENDA team
Bertagnolli, B.L.; Hager, L.P.
Role of flavin in acetoin production by two bacterial pyruvate oxidases
Arch. Biochem. Biophys.
300
364-371
1993
Escherichia coli, Pediococcus pseudomonas
Manually annotated by BRENDA team
Koland, J.G.; Miller, M.J.; Gennis, R.B.
Reconstitution of the membrane-bound, ubiquinone-dependent pyruvate oxidase respiratory chain of Escherichia coli with the cytochrome d terminal oxidase
Biochemistry
23
445-453
1984
Escherichia coli
Manually annotated by BRENDA team
Grabau, C.; Cronan, J.E., Jr.
In vivo function of Escherichia coli pyruvate oxidase specifically requires a functional lipid binding site
Biochemistry
25
3748-3751
1986
Escherichia coli
Manually annotated by BRENDA team
Chang, Y.Y.; Cronan, J.E., Jr.
Sulfhydryl chemistry detects three conformations of the lipid binding region of Escherichia coli pyruvate oxidase
Biochemistry
36
11564-11573
1997
Escherichia coli
Manually annotated by BRENDA team
Marchal, D.; Pantigny, J.; Laval, J.M.; Moiroux, J.; Bourdillon, C.
Rate constants in two dimensions of electron transfer between pyruvate oxidase, a membrane enzyme, and ubiquinone (coenzyme Q8), its water-insoluble electron carrier
Biochemistry
40
1248-1256
2001
Escherichia coli
Manually annotated by BRENDA team
Cunningham, C.C.; Hager, L.P.
Reactivation of the lipid-depleted pyruvate oxidase system from Escherichia coli with cell envelope neutral lipids
J. Biol. Chem.
250
7139-7146
1975
Escherichia coli, Escherichia coli K-12
Manually annotated by BRENDA team
Recny, M.A.; Hager, L.P.
Reconstitution of native Escherichia coli pyruvate oxidase from apoenzyme monomers and FAD
J. Biol. Chem.
257
12878-12886
1982
Escherichia coli
Manually annotated by BRENDA team
Carter, K.; Gennis, R.B.
Reconstitution of the Ubiquinone-dependent pyruvate oxidase system of Escherichia coli with the cytochrome o terminal oxidase complex
J. Biol. Chem.
260
10986-10990
1985
Escherichia coli
Manually annotated by BRENDA team
Mather, M.W.; Gennis, R.B.
Kinetic studies of the lipid-activated pyruvate oxidase flavoprotein of Escherichia coli
J. Biol. Chem.
260
16148-16155
1985
Escherichia coli
Manually annotated by BRENDA team
Bertagnolli, B.L.; Hager, L.P.
Activation of Escherichia coli pyruvate oxidase enhances the oxidation of hydroxyethylthiamin pyrophosphate
J. Biol. Chem.
266
10168-10173
1991
Escherichia coli
Manually annotated by BRENDA team
Wang, A.Y.; Chang, Y.Y.; Cronan, J.E., Jr.
Role of the tetrameric structure of Escherichia coli pyruvate oxidase in enzyme activation and lipid binding
J. Biol. Chem.
266
10959-10966
1991
Escherichia coli
Manually annotated by BRENDA team
Grabau, C.; Cronan, J.E., Jr.
Nucleotide sequence and deduced amino acid sequence of Escherichia coli pyruvate oxidase, a lipid-activated flavoprotein
Nucleic Acids Res.
14
5449-5460
1986
Escherichia coli
Manually annotated by BRENDA team
Hamilton, S.E.; Recny, M.; Hager, L.P.
Identification of the high-affinity lipid binding site in Escherichia coli pyruvate oxidase
Biochemistry
25
8179-8183
1986
Escherichia coli, Escherichia coli CG3
Manually annotated by BRENDA team
Borisov, V.B.; Verkhovsky, M.I.
Oxygen as acceptor
EcoSal Plus
6
2
2015
Escherichia coli
Manually annotated by BRENDA team
Li, Z.; Nimtz, M.; Rinas, U.
The metabolic potential of Escherichia coli BL21 in defined and rich medium
Microb. Cell Fact.
13
45
2014
Escherichia coli
Manually annotated by BRENDA team
Steinsiek, S.; Stagge, S.; Bettenbrock, K.
Analysis of Escherichia coli mutants with a linear respiratory chain
PLoS ONE
9
e87307
2014
Escherichia coli
Manually annotated by BRENDA team