Reference on EC 1.13.11.3 - protocatechuate 3,4-dioxygenase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Gibson, D.T.
Assay of enzymes of aromatic metabolism
Methods Enzymol.
6A
463-478
1971
Pseudomonas sp.
-
Stanier, R.Y.; Ingraham, J.L.
Protocatechuic acid oxidase
J. Biol. Chem.
210
799-808
1954
Pseudomonas fluorescens, Pseudomonas fluorescens A.3.12.
Gross, S.R.; Gafford, R.D.; Tatum, E.L.
The metabolism of protocatechuic acid by Neurospora
J. Biol. Chem.
219
781-796
1954
Neurospora crassa
Fujisawa, H.; Hayaishi, O.
Protocatechuate 3,4-dioxygenase. I. Crystallization and characterization
J. Biol. Chem.
243
2673-2681
1968
Pseudomonas aeruginosa, Pseudomonas aeruginosa B-10
Whittaker, J.W.; Orville, A.M.; Lipscomb, J.D.
Protocatechuate 3,4-dioxygenase from Brevibacterium fuscum
Methods Enzymol.
188
82-88
1990
Brevibacterium fuscum
Zaborsky, O.R.; Ogletree, J.
Immobilization of protocatechuate 3,4 -dioxygenase with activated agarose
Biochim. Biophys. Acta
289
68-76
1972
Pseudomonas aeruginosa
Que, L.; Lipscomb, J.D.; Munck, E.; Wood, J.M.
Protocatechuate 3,4-dioxygenase. Inhibitor studies and mechanistic implications
Biochim. Biophys. Acta
485
60-74
1977
Pseudomonas putida
May, S.W.; Phillips, R.S.; Oldham, C.D.
Interaction of protocatechuate-3,4-dioxygenase with fluoro-substituted hydroxybenzoic acids and related compounds
Biochemistry
17
1853-1860
1978
Pseudomonas putida
Mohan, V.P.; Kishore, G.; Sugumaran, M.; Vaidyanathan, C.S.
Purification and properties of protocatechuate-3,4-dioxygenase from Tecoma stans L.
Plant Sci. Lett.
16
267-272
1979
Tecoma stans
-
Kohlmiller, N.A.; Howard, J.B.
The primary structure of the alpha subunit of protocatechuate 3,4-dioxygenase. I. Isolation and sequence of the tryptic peptides
J. Biol. Chem.
254
7302-7308
1979
Pseudomonas putida
May, S.W.; Oldham, C.D.; Mueller, P.W.; Padgette, S.R.; Sowell, A.L.
Protocatechuate 3,4-dioxygenase. Mechanistic implications of inhibition by the transition state analog, 2-hydroxyisonicotinic acid N-oxide
J. Biol. Chem.
257
12746-12751
1982
Pseudomonas putida
Iwaki, M.; Kagamiyama, H.; Nozaki, M.
The primary structure of the beta-subunit of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa
Arch. Biochem. Biophys.
210
210-223
1981
Pseudomonas aeruginosa
Ludwig, M.L.; Weber, L.D.; Ballou, D.P.
Characterization of crystals of protocatechuate 3,4-dioxygenase from Pseudomonas cepacia
J. Biol. Chem.
259
14840-14842
1984
Burkholderia cepacia
Ohlendorf, D.H.; Weber, P.C.; Lipscomb, J.D.
Determination of the quaternary structure of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa
J. Mol. Biol.
195
225-227
1987
Pseudomonas putida
May, S.W.; Mueller, P.W.; Oldham, C.D.; Williamson, C.K.; Sowell, A.L.
Protocatechuate 3,4-dioxygenase: comparative study of inhibition and active-site interactions of pyridine N-oxides
Biochemistry
22
5331-5340
1983
Pseudomonas sp.
-
May, S.W.; Phillips, R.S.
Protocatechuate 3,4-dioxygenase: implications of ionization effects on binding and dissociation of halohydroxybenzoates and on catalytic turnover
Biochemistry
18
5933-5939
1979
Pseudomonas aeruginosa
Walsh, T.A.; Ballou, D.P.
Halogenated protocatechuates as substrates for protocatechuate dioxygenase from Pseudomonas cepacia
J. Biol. Chem.
258
14413-14421
1983
Burkholderia cepacia
Orville, A.M.; Lipscomb, J.D.
Binding of isotopically labeled substrates, inhibitors, and cyanide by protocatechuate 3,4-dioxygenase
J. Biol. Chem.
264
8791-8801
1989
Brevibacterium fuscum
Wojtas-Wasilewska, M.; Luterek, J.; Rogalski, J.
Immobilization of protocatechuate 3,4-dioxygenase from Pleurotus ostreatus on activated porous glass beads
Phytochemistry
27
2731-2733
1988
Pleurotus ostreatus
-
Chen, Y.P.; Dilworth, M.J.; Glenn, A.R.
Aromatic metabolism in Rhizobium trifolii: protocatechuate 3,4-dioxygenase
Arch. Microbiol.
138
187-190
1984
Rhizobium leguminosarum
-
Hou, C.T.; Lillard, M.O.; Schwartz, R.D.
Protocatechuate 3, 4-dioxygenase from Acinetobacter calcoaceticus
Biochemistry
15
582-588
1976
Acinetobacter calcoaceticus, Acinetobacter calcoaceticus 80-1
Durham, D.R.; Stirling, L.A.; Ornsten, L.N.; Perry, J.J.
Intergeneric evolutionary homology revealed by the study of protocatechuate 3,4-dioxygenase from Azotobacter vinelandii
Biochemistry
19
149-155
1980
Azotobacter vinelandii
Kurane, R.; Ara, K.; Nakamura, I.; Suzuki, T.; Fukuoka, S.
Protocatechuate 3,4-dioxygenase from Nocardia erythropolis
Agric. Biol. Chem.
48
2105-2111
1984
Nocardia erythropolis
-
Whittaker, J.W.; Lipscomb, J.D.; Kent, T.A.; Munck, E.
Brevibacterium fuscum protocatechuate 3,4-dioxygenase. Purification, crystallization, and characterization
J. Biol. Chem.
259
4466-4475
1984
Brevibacterium fuscum
Bull, C.; Ballou, D.P.
Purification and properties of protocatechuate 3,4-dioxygenase from Pseudomonas putida. A new iron to subunit stoichiometry
J. Biol. Chem.
256
12673-12680
1981
Pseudomonas putida
Hammer, A.; Stolz, A.; Knackmuss, H.J.
Purification and characterization of a novel type of protocatechuate 3,4-dioxygenase with the ability to oxidize 4-sulfocatechol
Arch. Microbiol.
166
92-100
1996
Agrobacterium tumefaciens, Hydrogenophaga palleronii, Agrobacterium tumefaciens S2, Hydrogenophaga palleronii S1
Orville, A.M.; Lipscomb, J.D.; Ohlendorf, D.H.
Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding
Biochemistry
36
10052-10066
1997
Pseudomonas putida
Orville, A.M.; Lipscomb, J.D.
Cyanide and nitric oxide binding to reduced protocatechuate 3,4-dioxygenase: insight into the basis for order-dependent ligand binding by intradiol catecholic dioxygenases
Biochemistry
36
14044-14055
1997
Pseudomonas putida
Frazee, R.W.; Orville, A.M.; Dolbeare, K.B.; Yu, H.; Ohlendorf, D.H.; Lipscomb, J.D.
The axial tyrosinate Fe3+ ligand in protocatechuate 3,4-dioxygenase influences substrate binding and product release: evidence for new reaction cycle intermediates
Biochemistry
37
2131-2144
1998
no activity in Pseudomonas fluorescens, Pseudomonas putida
D'Argenio, D.A.; Vetting, M.W.; Ohlendorf, D.H.; Ornston, L.N.
Substitution, insertion, deletion, suppression, and altered substrate specificity in functional protocatechuate 3,4-dioxygenases
J. Bacteriol.
181
6478-6487
1999
Acinetobacter sp., Acinetobacter sp. ADP1
Buchan, A.; Collier, L.S.; Neidle, E.L.; Moran, M.A.
Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage
Appl. Environ. Microbiol.
66
4662-4672
2000
Roseobacter sp., Sagittula stellata
Patil, P.V.; Ballou, D.P.
The use of protocatechuate dioxygenase for maintaining anaerobic conditions in biochemical experiments
Anal. Biochem.
286
187-192
2000
Burkholderia cepacia
Vetting, M.W.; D'Argenio, D.A.; Ornston, L.N.; Ohlendorf, D.H.
Structure of Acinetobacter strain ADP1 protocatechuate 3,4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase
Biochemistry
39
7943-7955
2000
Acinetobacter sp.
Contzen, M.; Burger, S.; Stolz, A.
Cloning of the genes for a 4-sulphocatechol-oxidizing protocatechuate 3,4-dioxygenase from Hydrogenophaga intermedia S1 and identification of the amino acid residues responsible for the ability to convert 4-sulphocatechol
Mol. Microbiol.
41
199-205
2001
Agrobacterium tumefaciens, Hydrogenophaga palleronii
Kahng, H.Y.; Cho, K.; Song, S.Y.; Kim, S.J.; Leem, S.H.; Kim, S.I.
Enhanced detection and characterization of protocatechuate 3,4-dioxygenase in Acinetobacter lwoffii K24 by proteomics using a column separation
Biochem. Biophys. Res. Commun.
295
903-909
2002
Acinetobacter lwoffii, Acinetobacter lwoffii K24
Brown, C.K.; Vetting, M.W.; Earhart, C.A.; Ohlendorf, D.H.
Biophysical analyses of designed and selected mutants of protocatechuate 3,4-dioxygenase1
Annu. Rev. Microbiol.
58
555-585
2004
Acinetobacter sp., Pseudomonas putida
Satyshur, K.A.; Rao, S.T.; Lipscomb, J.D.; Wood, J.M.
Preliminary crystallographic study of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa
J. Biol. Chem.
255
10015-10016
1980
Pseudomonas aeruginosa
Ohlendorf, D.H.; Orville, A.M.; Lipscomb, J.D.
Structure of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa at 2.15 A resolution
J. Mol. Biol.
244
586-608
1994
Pseudomonas aeruginosa
Gore, J.M.; Ran, F.A.; Ornston, L.N.
Deletion mutations caused by DNA strand slippage in Acinetobacter baylyi
Appl. Environ. Microbiol.
72
5239-5245
2006
Acinetobacter baylyi
Parulekar, C.; Bhosle, S.; Mavinkurve, S.
Multiple pathways for the biodegradation of aromatic compounds in Pseudomonas mendocina P2d
Asian J. Microbiol. Biotechnol. Environ. Sci.
7
85-89
2005
Pseudomonas mendocina
-
Valley, M.P.; Brown, C.K.; Burk, D.L.; Vetting, M.W.; Ohlendorf, D.H.; Lipscomb, J.D.
Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis
Biochemistry
44
11024-11039
2005
Pseudomonas putida
Kurahashi, T.; Oda, K.; Sugimoto, M.; Ogura, T.; Fujii, H.
Trigonal-bipyramidal geometry induced by an external water ligand in a sterically hindered Iron salen complex, related to the active site of protocatechuate 3,4-dioxygenase
Inorg. Chem.
45
7709-7721
2006
Pseudomonas putida
Borowski, T.; Siegbahn, P.E.
Mechanism for Catechol Ring Cleavage by Non-Heme Iron Intradiol Dioxygenases: A Hybrid DFT Study
J. Am. Chem. Soc.
128
12941-12953
2006
Pseudomonas putida
Shen, X.; Liu, S.
Key enzymes of the protocatechuate branch of the beta-ketoadipate pathway for aromatic degradation in Corynebacterium glutamicum
Sci. China C Life Sci.
48
241-249
2005
Corynebacterium glutamicum
Bubinas, A.; Giedraityte, G.; Kalediene, L.
Protocatechuate 3,4-dioxygenase from thermophilic Geobacillus sp. strain
Biologija (Vilnius)
53
31-34
2007
Geobacillus sp.
-
Kim, D.; Kim, S.W.; Choi, K.Y.; Lee, J.S.; Kim, E.
Molecular cloning and functional characterization of the genes encoding benzoate and p-hydroxybenzoate degradation by the halophilic Chromohalobacter sp. strain HS-2
FEMS Microbiol. Lett.
280
235-241
2008
Chromohalobacter sp. HS-2 (A8I4B3), Chromohalobacter sp. HS-2 (A8I4B7)
Pau, M.Y.; Davis, M.I.; Orville, A.M.; Lipscomb, J.D.; Solomon, E.I.
Spectroscopic and electronic structure study of the enzyme-substrate complex of intradiol dioxygenases: substrate activation by a high-spin ferric non-heme iron site
J. Am. Chem. Soc.
129
1944-1958
2007
Brevibacterium fuscum, Pseudomonas putida
Buchan, A.; Neidle, E.L.; Moran, M.A.
Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage
Appl. Environ. Microbiol.
70
1658-1668
2004
Ruegeria pomeroyi, Sulfitobacter sp., Roseovarius nubinhibens ISM, Sagittula stellata E-37
Bubinas, A.; Giedraityte, G.; Kalediene, L.; Nivinskiene, O.; Butkiene, R.
Degradation of naphthalene by thermophilic bacteria via a pathway, through protocatechuic acid
Cent. Eur. J. Biol.
3
61-68
2008
Geobacillus sp.
-
Guzik, U.; Gren, I.; Wojcieszynska, D.; Labuzek, S.
Isolation and characterization of a novel strain of stenotrophomonas maltophilia possessing various dioxygenases for monocyclic hydrocarbon degradation
Braz. J. Microbiol.
40
285-291
2009
Stenotrophomonas maltophilia, Stenotrophomonas maltophilia KB2
Zimmermann, T.; Sorg, T.; Siehler, S.Y.; Gerischer, U.
Role of Acinetobacter baylyi Crc in catabolite repression of enzymes for aromatic compound catabolism
J. Bacteriol.
191
2834-2842
2009
Acinetobacter baylyi, Acinetobacter baylyi Crc
Zhao, K.X.; Huang, Y.; Chen, X.; Wang, N.X.; Liu, S.J.
PcaO positively regulates pcaHG of the beta-ketoadipate pathway in Corynebacterium glutamicum
J. Bacteriol.
192
1565-1572
2010
Corynebacterium glutamicum
Sim, H.; Jung, M.; Cho, Y.
Purification and characterization of protocatechuate 3,4-dioxygenase from Pseudomonas pseudoalcaligenes KF707
J. Korean Soc. Appl. Biol. Chem.
56
401-408
2013
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
-
Da Silva, A.; Jacques, R.; Andreazza, R.; Bento, F.; Camargo, F.
The effects of trace elements, cations, and environmental conditions on protocatechuate 3,4-dioxygenase activity
Sci. Agric. (Piracicaba, Braz.)
70
68-73
2013
Leifsonia sp.
-
Guzik, U.; Hupert-Kocurek, K.; Sa?ek, K.; Wojcieszynska, D.
Influence of metal ions on bioremediation activity of protocatechuate 3,4-dioxygenase from Stenotrophomonas maltophilia KB2
World J. Microbiol. Biotechnol.
29
267-273
2013
Stenotrophomonas maltophilia, Stenotrophomonas maltophilia KB2
Zhang, L.S.; Fang, Y.; Zhou, Y.; Ye, B.C.
Improvement of the Stabilization and activity of protocatechuate 3,4-dioxygenase isolated from Rhizobium sp. LMB-1 and immobilized on Fe3O4 nanoparticles
Appl. Biochem. Biotechnol.
183
1035-1048
2017
Rhizobium sp. LMB-1 (A0A193DXA9 and A0A193DXP2)
Guzik, U.; Hupert-Kocurek, K.; Krysiak, M.; Wojcieszynska, D.
Degradation potential of protocatechuate 3,4-dioxygenase from crude extract of Stenotrophomonas maltophilia strain KB2 immobilized in calcium alginate hydrogels and on glyoxyl agarose
BioMed Res. Int.
2014
138768
2014
Stenotrophomonas maltophilia (I0DHJ0 AND I0DHJ1), Stenotrophomonas maltophilia, Stenotrophomonas maltophilia KB2 (I0DHJ0 AND I0DHJ1)
Sainsbury, P.D.; Mineyeva, Y.; Mycroft, Z.; Bugg, T.D.
Chemical intervention in bacterial lignin degradation pathways development of selective inhibitors for intradiol and extradiol catechol dioxygenases
Bioorg. Chem.
60
102-109
2015
Rhodococcus jostii (Q0SH27 AND Q0SH26), Rhodococcus jostii
Mulla, S.; Bangeppagari, M.; Mahadevan, G.; Eqani, S.; Sajjan, D.; Tallur, P.; Megadi, V.; Ninnekar, H.
Biodegradation of 3-chlorobenzoate and 3-hydroxybenzoate by polyurethane foam immobilized cells of Bacillus sp. OS13
J. Environ. Chem. Eng.
4
1423-1431
2016
Bacillus sp. (in: Bacteria), Bacillus sp. (in: Bacteria) OS13
-
Guzik, U.; Hupert-Kocurek, K.; Sitnik, M.; Wojcieszylska, D.
Protocatechuate 3,4-dioxygenase a wide substrate specificity enzyme isolated from Stenotrophomonas maltophilia KB2 as a useful tool in aromatic acid biodegradation
J. Mol. Microbiol. Biotechnol.
24
150-160
2014
Stenotrophomonas maltophilia (I0DHJ0 AND I0DHJ1), Stenotrophomonas maltophilia KB2 (I0DHJ0 AND I0DHJ1), Stenotrophomonas maltophilia KB2
Das, R.; Hamid, S.B.; Annuar, M.S.
Highly efficient and stable novel nanobiohybrid catalyst to avert 3,4-dihydroxybenzoic acid pollutant in water
Sci. Rep.
6
33572
2016
Pseudomonas putida
Senavirathne, G.; Lopez, M.A.; Messer, R.; Fishel, R.; Yoder, K.E.
Expression and purification of nuclease-free protocatechuate 3,4-dioxygenase for prolonged single-molecule fluorescence imaging
Anal. Biochem.
556
78-84
2018
Pseudomonas putida
Semana, P.; Powlowski, J.
Four aromatic intradiol ring cleavage dioxygenases from Aspergillus niger
Appl. Environ. Microbiol.
85
e01786-19
2019
Aspergillus niger
Messer, R.K.; Lopez, M.A.; Senavirathne, G.; Yoder, K.E.
Expression and purification of nuclease-free oxygen scavenger protocatechuate 3,4-dioxygenase
J. Vis. Exp.
153
10.3791
2019
Pseudomonas putida
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