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Information on EC 1.1.1.47 - glucose 1-dehydrogenase [NAD(P)+] and Organism(s) Saccharolobus solfataricus and UniProt Accession O93715

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EC Tree
IUBMB Comments
This enzyme has similar activity with either NAD+ or NADP+. cf. EC 1.1.1.118, glucose 1-dehydrogenase (NAD+) and EC 1.1.1.119, glucose 1-dehydrogenase (NADP+).
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This record set is specific for:
Saccharolobus solfataricus
UNIPROT: O93715
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Word Map
The taxonomic range for the selected organisms is: Saccharolobus solfataricus
The expected taxonomic range for this enzyme is: Bacteria, Archaea, Eukaryota
Synonyms
hexose-6-phosphate dehydrogenase, glcdh-i, glcdh-ii, ssgdh, glcdh-iwg3, bmglcdh-iv, lsgdh, bzgdh, nad(p)-dependent glucose dehydrogenase, hexose phosphate dehydrogenase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
beta-D-glucose:NAD(P)+ 1-oxidoreductase
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-
-
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D-glucose dehydrogenase (NAD(P))
-
-
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GDH
-
-
-
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general stress protein 74
-
-
-
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GlcDH
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-
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glucose 1-dehydrogenase 3
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glucose dehydrogenase
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GSP74
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-
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hexose phosphate dehydrogenase
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hexose-6-phosphate dehydrogenase
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
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oxidation
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reduction
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SYSTEMATIC NAME
IUBMB Comments
D-glucose:NAD(P)+ 1-oxidoreductase
This enzyme has similar activity with either NAD+ or NADP+. cf. EC 1.1.1.118, glucose 1-dehydrogenase (NAD+) and EC 1.1.1.119, glucose 1-dehydrogenase (NADP+).
CAS REGISTRY NUMBER
COMMENTARY hide
9028-53-9
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
2-deoxy-D-glucose + NAD(P)+
?
show the reaction diagram
low activity
-
-
?
6-deoxy-D-glucose + NAD(P)+
?
show the reaction diagram
-
-
-
?
beta-D-galactose + NADP+
D-galactono-1,5-lactone + NADPH
show the reaction diagram
-
-
-
?
beta-D-glucose + NAD(P)+
D-glucono-1,5-lactone + NAD(P)H + H+
show the reaction diagram
D-fucose + NAD(P)+
?
show the reaction diagram
-
-
-
?
D-galactose + NAD(P)+
D-galactono-1,5-lactone + NAD(P)H
show the reaction diagram
equally active compared to beta-D-glucose
-
-
?
D-glucosamine + NAD(P)+
?
show the reaction diagram
low activity
-
-
?
D-glucose + 1-(3-phenylpropyl)-1,4-dihydropyridine-3-carboxamide
D-glucono-1,5-lactone + reduced 1-(3-phenylpropyl)-1,4-dihydropyridine-3-carboxamide
show the reaction diagram
-
-
-
?
D-glucose + 1-benzyl-3-carbamoylpyridin-1-ium chloride
D-glucono-1,5-lactone + reduced 1-benzyl-3-carbamoylpyridin-1-ium chloride
show the reaction diagram
-
-
-
?
D-glucose + 1-phenethyl-1,4-dihydropyridine-3-carboxamide
D-glucono-1,5-lactone + reduced 1-phenethyl-1,4-dihydropyridine-3-carboxamide
show the reaction diagram
-
-
-
?
D-glucose + NAD+
D-glucono-1,5-lactone + NADH + H+
show the reaction diagram
-
-
-
?
D-idose + NAD(P)+
?
show the reaction diagram
low activity
-
-
?
D-lyxose + NAD(P)+
?
show the reaction diagram
low activity
-
-
?
D-xylose + NAD(P)+
?
show the reaction diagram
-
-
-
?
D-xylose + NAD(P)+
D-xylono-1,5-lactone + NAD(P)H + H+
show the reaction diagram
-
-
-
?
L-arabinose + NAD(P)+
?
show the reaction diagram
-
-
-
?
2-amino-2-deoxy-D-glucose + NAD+
2-amino-2-deoxy-D-glucono-1,5-lactone + NADH + H+
show the reaction diagram
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26% of the activity with D-glucose
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-
?
2-amino-2-deoxy-D-glucose + NADP+
2-amino-2-deoxy-D-glucono-1,5-lactone + NADPH + H+
show the reaction diagram
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5% of the activity with D-glucose and NAD+
-
-
?
2-deoxy-D-glucose + NAD+
2-deoxy-D-glucono-1,5-lactone + NADH + H+
show the reaction diagram
-
12% of the activity with glucose
-
-
?
2-deoxy-D-glucose + NADP+
2-deoxy-D-glucono-1,5-lactone + NADPH + H+
show the reaction diagram
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25% of the activity with D-glucose and NAD+
-
-
?
6-deoxy-D-glucose + NAD+
6-deoxy-D-glucono-1,5-lactone + NADH + H+
show the reaction diagram
-
66% of the activity with D-glucose
-
-
?
6-deoxy-D-glucose + NADP+
? + NADPH
show the reaction diagram
-
9% of the activity with D-glucose and NAD+
-
-
?
beta-D-galactose + NADP+
D-galactono-1,5-lactone + NADPH + H+
show the reaction diagram
-
-
-
-
?
beta-D-glucose + NAD(P)(+)
D-glucono-1,5-lactone + NAD(P)H
show the reaction diagram
the enzyme might represent the major player in glucose catabolism via the branched Entner-Doudoroff pathway
-
-
ir
beta-D-glucose + NAD(P)+
D-glucono-1,5-lactone + NAD(P)H + H+
show the reaction diagram
-
-
-
-
?
beta-D-glucose + NAD+
D-glucono-1,5-lactone + NADH
show the reaction diagram
the enzyme is absolutely specific for glucose. D-Galactose, D-allose, D-mannose, D-xylose, L-arabinose, D-ribose, D-xylose, D-arabinose, L-xylose, D-glucosamine, 2-deoxy-D-glucose, D-fucose, D-lactose, D-maltose, D-fructose and ethanol are not used as substrates. the catalytic efficiency for the reaction with beta-D-glucose and NADP+ (kcat/Km) is 7.8 fold higher compared to catalytic efficiency for the reaction with beta-D-glucose and NAD+
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ir
beta-D-glucose + NAD+
D-glucono-1,5-lactone + NADH + H+
show the reaction diagram
beta-D-glucose + NADP+
D-glucono-1,5-lactone + NADPH
show the reaction diagram
the enzyme is absolutely specific for glucose. D-Galactose, D-allose, D-mannose, D-xylose, L-arabinose, D-ribose, D-xylose, D-arabinose, L-xylose, D-glucosamine, 2-deoxy-D-glucose, D-fucose, D-lactose, D-maltose, D-fructose and ethanol are not used as substrates. the catalytic efficiency for the reaction with beta-D-glucose and NADP+ (kcat/Km) is 7.8 fold higher compared to catalytic efficiency for the reaction with beta-D-glucose and NAD+
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-
ir
beta-D-glucose + NADP+
D-glucono-1,5-lactone + NADPH + H+
show the reaction diagram
beta-D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
show the reaction diagram
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26% activity compared to D-glucose
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r
D-allose + NAD+
D-allono-1,5-lactone + NADH
show the reaction diagram
-
8% of the activity with D-glucose
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-
?
D-allose + NADP+
D-allono-1,5-lactone + NADPH
show the reaction diagram
-
13% of the activity with D-glucose and NAD+
-
-
?
D-altrose + NAD+
D-altrono-1,5-lactone + NADH
show the reaction diagram
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5% of the activity with D-glucose
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-
?
D-altrose + NADP+
D-altrono-1,5-lactone + NADPH
show the reaction diagram
-
12% of the activity with D-glucose and NAD+
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-
?
D-galactose + NAD+
D-galactono-1,5-lactone + NADH
show the reaction diagram
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15% of the activity with D-glucose and NAD+
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-
?
D-galactose + NADP+
D-galactono-1,5-lactone + NADPH
show the reaction diagram
activity with substrate D-galactose in presence of cosubstrate NADP+
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-
?
D-glucose + NAD+
D-glucono-1,5-lactone + NADH + H+
show the reaction diagram
-
-
-
?
D-gulose + NAD+
D-gulono-1,5-lactone + NADH
show the reaction diagram
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8% of the activity with D-glucose
-
-
?
D-gulose + NADP+
D-gulono-1,5-lactone + NADPH
show the reaction diagram
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12% of the activity with D-glucose and NAD+
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?
D-idose + NAD+
D-idono-1,5-lactone + NADH
show the reaction diagram
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65% of the activity with D-glucose
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?
D-idose + NADP+
D-idono-1,5-lactone + NADPH
show the reaction diagram
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12% of the activity with D-glucose and NAD+
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?
D-mannose + NADP+
D-mannono-1,5-lactone + NADPH
show the reaction diagram
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no activity
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?
D-ribose + NADP+
D-ribono-1,5-lactone + NADPH
show the reaction diagram
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4% of the activity with D-glucose and NADP+
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?
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
show the reaction diagram
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28% of the activity with D-glucose and NAD+
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?
D-xylose + NADP+
D-xylono-1,5-lactone + NADPH + H+
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
beta-D-glucose + NAD(P)+
D-glucono-1,5-lactone + NAD(P)H + H+
show the reaction diagram
first step of the non-phosphorylative Entner-Doudoroff pathway
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-
ir
beta-D-glucose + NAD(P)(+)
D-glucono-1,5-lactone + NAD(P)H
show the reaction diagram
the enzyme might represent the major player in glucose catabolism via the branched Entner-Doudoroff pathway
-
-
ir
beta-D-glucose + NADP+
D-glucono-1,5-lactone + NADPH + H+
show the reaction diagram
GDH-2 is absolutely specific for D-glucose. D-galactose, D-allose, D-mannose, D-xylose, L-arabinose, D-ribose, D-xylose, D-arabinose, L-xylose, D-glucosamine, 2-deoxy-D-glucose, D-fucose, D-lactose, D-maltose, D-fructose and ethanol were not used as substrates. kcat/Km of NADP+ is about 8fold higher compared to kcat/Km of NAD+
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADP+
additional information
dual cofactor specificity due to presence of Asn215, His217, and the GXGXXA motif
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METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Zn2+
enzyme contains the catalytic zinc binding residues Cys39 and His66, no increase in activity by addition of 0.1 mM ZnCl2
Ca2+
-
maximal activity at 20 mM
Mg2+
-
maximal activity at 20 mM
Mn2+
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maximal activity at 20 mM
additional information
not affected by 0.1 mM CaCl2 and MgCl2
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
EDTA
60% inhibition at 10 mM
2-mercaptoethanol
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1 mM, room temperature, pH 9.0, rapid inactivation
5,5'-dithiobis(2-nitrobenzoic acid)
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1 mM, room temperature, pH 9.0, 50% inactivation
EDTA
-
50 mM, 5% activity left
N-ethylmaleimide
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3 mM, room temperature, pH 9.0, 50% inactivation
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2.5 - 12.76
1-(3-phenylpropyl)-1,4-dihydropyridine-3-carboxamide
-
1.67 - 14.78
1-benzyl-3-carbamoylpyridin-1-ium chloride
-
4.35 - 16.33
1-phenethyl-1,4-dihydropyridine-3-carboxamide
-
0.44 - 204
beta-D-galactose
1.3 - 72.5
beta-D-glucose
0.18 - 76.3
D-xylose
0.17 - 2.64
NAD+
0.44 - 1.3
NADP+
22
beta-D-galactose
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pH 9.0, 70°C, coenzyme NADP+
0.17 - 8
beta-D-glucose
68
beta-D-xylose
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pH 9.0, 70°C, coenzyme NAD+
0.17 - 4.59
D-glucose
1.2 - 5.59
NAD+
0.03 - 0.15
NADP+
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.00023 - 0.00697
1-(3-phenylpropyl)-1,4-dihydropyridine-3-carboxamide
-
0.00078 - 0.009
1-benzyl-3-carbamoylpyridin-1-ium chloride
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0.00047 - 0.042
1-phenethyl-1,4-dihydropyridine-3-carboxamide
-
7 - 61
beta-D-galactose
4 - 75
beta-D-glucose
7 - 81
D-xylose
0.00008 - 74.9
NAD+
37.4 - 47.7
NADP+
19.34 - 68.23
beta-D-glucose
19.34 - 68.23
D-glucose
54.47 - 105.4
NAD+
26.74 - 44.17
NADP+
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.00002 - 0.0017
1-(3-phenylpropyl)-1,4-dihydropyridine-3-carboxamide
-
0.00006 - 0.00164
1-benzyl-3-carbamoylpyridin-1-ium chloride
-
0.00004 - 0.00517
1-phenethyl-1,4-dihydropyridine-3-carboxamide
-
0.00019 - 0.01594
NAD+
14.86 - 115.2
beta-D-glucose
14.86 - 115.2
D-glucose
9.74 - 31.95
NAD+
178.3 - 294.5
NADP+
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
37 - 77
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37°C: 20% of maximal activity, 77°C: optimum
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
the enzyme is involved in glucose catabolism via the branched Entner–Doudoroff pathway
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
GLCDH_SACSO
366
0
40891
Swiss-Prot
-
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
124000
-
gel filtration
130000
-
sedimentation equilibrium
33000
-
4 * 33000, SDS-PAGE
39000
x * 39000, SDS-PAGE, x * 39970, calculated
39970
x * 39000, SDS-PAGE, x * 39970, calculated
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
homotetramer
4 * 40000
?
x * 39000, SDS-PAGE, x * 39970, calculated
tetramer
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging-drop vapour diffusion using a mother liquor of 12% (v/v) polyethylene glycol 4000, 0.1 M MES (pH 5.8), and 3% (v/v) propan-2-ol
hanging-drop vapour diffusion
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PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
I192T
kcat/Km-values of the mutant enzyme for NAD+ and the biomimetic cofactors are lower than the kcat/Km-values of wild-type enzyme
I192T/V306G
kcat/Km-values of the mutant enzyme for the biomimetic cofactors are higher than the kcat/Km-values of wild-type enzyme. The kcat/Km-value for NAD+ is about 3fold lower than the kcat/Km-value of the wild-type enzyme
I192T/V306I
mutant enzyme shows 10fold higher activity with 1-phenethyl-1,4-dihydropyridine-3-carboxamide compared with the wild-type enzyme. Using this engineered variant in combination with an enoate reductase from Thermus scotoductus results in an enzyme-coupled regeneration process for biomimetic cofactor without ribonucleotide or ribonucleotide analogue and full conversion of 10 mM 2-methylbut-2-enal with 1-phenethyl-1,4-dihydropyridine-3-carboxamide as cofactor
T41A
reduced activity
T41V
reduced activity
V306G
kcat/Km-values of the mutant enzyme for the biomimetic cofactors are slightly higher than the kcat/Km-values of wild-type enzyme. The kcat/Km-value for NAD+ is about 2fold lower than the kcat/Km-value of the wild-type enzyme
V306I
kcat/Km-values of the mutant enzyme for NAD+ and the biomimetic cofactors are lower than the kcat/Km-values of wild-type enzyme
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
0.05% SDS, no loss of activity, 0.1%, slow decrease
-
2 M urea, 24 h, room temperature, no loss of activity, slow decrease at 4 M
-
4 M guanidinium chloride, rapid inactivation
-
H4-furan, rapid inactivation
-
ORGANIC SOLVENT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Acetone
-
50%, 24 h, room temperature, no loss of activity
Ethanol
-
100%, slow decrease
Methanol
-
50%, 24 h, room temperature, no loss of activity
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
4°C, 20 mM MgCl2, 20% ethylene glycol, several months, stable
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
gel filtration on Superdex 75 26/60, anion exchange chromatography, and affinity chromatography using Reactive Red-500 dye affinity medium and an NaCl gradient of 0 to 1.5 M
native enzyme by gel filtration, recombinant enzyme from Escherichia coli by heat denaturation, and affinity gel chromatography
ammonium sulfate, SP-Sephadex, Phenyl-Sepharose, Affi-Gel Blue
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
DNA and amino acid sequence determination and analysis, functional expression in Escherichia coli
expressed in Escherichia coli
expressed in Escherichia coli strain JM109
-
expression in Escherichia coli
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
biotechnology
enzymatic reduction of the nicotinamide biomimetic cofactors 1-phenethyl-1,4-dihydropyridine-3-carboxamide using glucose dehydrogenase mutant I192T/V306I provides a regeneration system for artificial cofactors. The I192T/V306I mutant enzyme shows 10fold higher activity with 1-phenethyl-1,4-dihydropyridine-3-carboxamide compared with the wild-type enzyme. Using this engineered variant in combination with an enoate reductase from Thermus scotoductus results in an enzyme-coupled regeneration process for biomimetic cofactor without ribonucleotide or ribonucleotide analogue and full conversion of 10 mM 2-methylbut-2-enal with 1-phenethyl-1,4-dihydropyridine-3-carboxamide as cofactor
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Giardina, P.; DeBasia, M.G.; DeRosa, M.; Gambacort, A.; Buonocore, V.
Glucose dehydrogenase from the thermoacidophilic archaebacterium Sulfolobus solfataricus
Biochem. J.
239
517-522
1986
Saccharolobus solfataricus
Manually annotated by BRENDA team
Lamble, H.J.; Heyer, N.I.; Bull, S.D.; Hough, D.W.; Danson, M.J.
Metabolic pathway promiscuity in the archaeon Sulfolobus solfataricus revealed by studies on glucose dehydrogenase and 2-keto-3-deoxygluconate aldolase
J. Biol. Chem.
278
34066-34072
2003
Saccharolobus solfataricus (O93715)
Manually annotated by BRENDA team
Theodossis, A.; Milburn, C.C.; Heyer, N.I.; Lamble, H.J.; Hough, D.W.; Danson, M.J.; Taylor, G.L.
Preliminary crystallographic studies of glucose dehydrogenase from the promiscuous Entner-Doudoroff pathway in the hyperthermophilic archaeon Sulfolobus solfataricus
Acta Crystallogr. Sect. F
F61
112-115
2005
Saccharolobus solfataricus
Manually annotated by BRENDA team
Milburn, C.C.; Lamble, H.J.; Theodossis, A.; Bull, S.D.; Hough, D.W.; Danson, M.J.; Taylor, G.L.
The structural basis of substrate promiscuity in glucose dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus
J. Biol. Chem.
281
14796-14804
2006
Saccharolobus solfataricus (O93715)
Manually annotated by BRENDA team
Haferkamp, P.; Kutschki, S.; Treichel, J.; Hemeda, H.; Sewczyk, K.; Hoffmann, D.; Zaparty, M.; Siebers, B.
An additional glucose dehydrogenase from Sulfolobus solfataricus: fine-tuning of sugar degradation?
Biochem. Soc. Trans.
39
77-81
2011
Saccharolobus solfataricus (Q97U21)
Manually annotated by BRENDA team
Haferkamp, P.
Biochemical studies of enzymes involved in glycolysis of the thermoacidophilic crenarchaeon Sulfolobus solfataricus
PH. D. Thesis Universitt Duisburg-Essen
2011
0000
2011
Saccharolobus solfataricus (Q97U21), Saccharolobus solfataricus DSM 1617 (Q97U21)
-
Manually annotated by BRENDA team
Nowak, C.; Pick, A.; Lommes, P.; Sieber, V.
Enzymatic reduction of nicotinamide biomimetic cofactors using an engineered glucose dehydrogenase providing a regeneration system for artificial cofactors
ACS Catal.
7
5202-5208
2017
Saccharolobus solfataricus (O93715)
-
Manually annotated by BRENDA team