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3.6.1.1: inorganic diphosphatase

This is an abbreviated version!
For detailed information about inorganic diphosphatase, go to the full flat file.

Word Map on EC 3.6.1.1

Reaction

diphosphate
+
H2O
= 2 phosphate

Synonyms

acid PPase, AT727_13205, AtPPA1, AtPPsPase1, BT2127, CBS-PPase, CBS-PPase1, chloroplast inorganic pyrophosphatase 1, class A type PPA, cobalt-dependent inorganic pyrophosphatase, CPE2055, cytosolic PPase, D1C enzyme, dhPPase, E-PPase, EcPpA, EcPPiase, ehPPase, family I inorganic pyrophosphatase, family I PPase, family I pyrophosphatase, family II inorganic pyrophosphatase, family II PPase, H+-PPase, H+-pyrophosphatase, H+-translocating/vacuolar inorganic pyrophosphatase, Hpp1 protein, HVO_0729, HvPPA, hyperthermophilic inorganic pyrophosphatase, inorganic diphosphatase, inorganic PPase, inorganic pyrophosphatase, inorganic pyrophosphatase 1, inorganic pyrophosphatase-like protein, inorganic pyrophosphorylase, IPP, IPP1, Ipp1p, IPPase, LHPPase, M-PPase, manganese-dependent inorganic pyrophosphatase, MazG, MdPPa, membrane-integral inorganic pyrophosphatase, membrane-integral pyrophosphatase, miPPase, mitochondrial pyrophosphatase, Mn2+-bound canonical Family II PPase, More, Mtb PPiase, Mthe_0236, MtPPA1, MtPPiase, nucleotide-regulated pyrophosphatase, OVP1, p26.1a, p26.1b, PfPPase, PH1907, Pho-PPase, phospholysine phosphohistidine inorganic pyrophosphate phosphatase, phosphoprotein p26.1, PPA, PPA1, PpaC, PPase, PPase 1, PPase 2, ppase-1, PPase-2, PPase1, PPase2, PPase4, PPias, PPIase, proton-translocating inorganic pyrophosphatase, PYP-1, pyrophosphatase, pyrophosphatase, inorganic, Pyrophosphate phospho-hydrolase, pyrophosphate phospho-hydrolase 1, Pyrophosphate phosphohydrolase, Pyrophosphate-energized inorganic pyrophosphatase, RmPPase, Rv3628, siPPiase, soluble inorganic pyrophosphatase, soluble inorganic pyrophosphatase 2, soluble pyrophosphatase, soluble-type yeast PPase, sPPAse, ST2226, Tc-sPPase, TC004566, TcasGA2_TC004566, TgPPase, ThPP1, Tm-PPase, TM0913, V-PPase, vacuolar H(+)-PPase, vacuolar H(+)-pyrophosphatase, vacuolar H+-pyrophosphatase, vacuolar H+-translocating inorganic pyrophosphatase, vacuolar H+-translocating pyrophosphatase, vacuolar pyrophosphatase, VHP, VP1, VSP, VVPP1

ECTree

     3 Hydrolases
         3.6 Acting on acid anhydrides
             3.6.1 In phosphorus-containing anhydrides
                3.6.1.1 inorganic diphosphatase

Engineering

Engineering on EC 3.6.1.1 - inorganic diphosphatase

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PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D103N
site-directed mutagenesis
D135N
site-directed mutagenesis
D19A
site-directed mutagenesis
D98N
site-directed mutagenesis
D19A
-
site-directed mutagenesis
-
H98Q
the mutant shows highly reduced activity compared to the wild-type enzyme, crystal structure determination and comparison of substrate/inhibitor binding to the wild-type enzyme
D11N
site-directed mutagenesis, inactive mutant
D13A
site-directed mutagenesis, inactive mutant
D13N
site-directed mutagenesis, inactive mutant
E47A
site-directed mutagenesis, inactive mutant
E47D
site-directed mutagenesis, inactive mutant
E47N
site-directed mutagenesis, inactive mutant
E47Q
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
H23A
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
K147A
site-directed mutagenesis, inactive mutant
K79A
site-directed mutagenesis, inactive mutant
M20A
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
M20K
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
M20L
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
N172A
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
Q117A
site-directed mutagenesis, inactive mutant
R49A
site-directed mutagenesis, inactive mutant
S115A
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
S19A
site-directed mutagenesis, inactive mutant
S80A
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
T113A
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
T50A
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
Y76F
site-directed mutagenesis, inactive mutant
D13A
-
site-directed mutagenesis, inactive mutant
-
E47A
-
site-directed mutagenesis, inactive mutant
-
K79A
-
site-directed mutagenesis, inactive mutant
-
M20L
-
site-directed mutagenesis, altered kinetics compared to the wild-type enzyme
-
S19A
-
site-directed mutagenesis, inactive mutant
-
N312S
site-directed mutagenesis, the mutant shows altered Mg2+ dependence and kinetics compared to wild-type. The N312S substitution in dhPPase abolishes kinetic cooperativity and reverses the effect of Ap4A on it. In the presence of 0.05 mMATP and 5 mM Mg2+, the hydrolysis kinetics of N312S-dhPPase remains non-cooperative, the catalytic constant increases 1.5fold, and the average Km value increases about 5.5fold
R276A
site-directed mutagenesis, the mutant retains about 50% catalytic efficiency compared to wild-type, negative co-operativity is retained in the R276A variant in the presence of mononucleotides but is reversed by diadenosine tetraphosphate. The R276A substitution abolishes activation by ATP and diadenosine tetraphosphate, while preserving the ability to bind them
R276E
site-directed mutagenesis, the mutant retains about 50% catalytic efficiency and exhibits reduced kinetic cooperativity compared to wild-type
R276K
site-directed mutagenesis, the mutant retains about 50% catalytic efficiency and exhibits reduced kinetic cooperativity compared to wild-type
N312S
D102N
site-directed mutagenesis, the active site residue mutation does only marginally influence the pH-dependence of fluoride inhibition
D102V
-
large decrease in metal binding affinity
D42E
-
site-directed mutagenesis, the mutant shows a decrease in affinity to the effector site and, as a consequence, kinetics of substrate hydrolysis that do not obey the Michaelis-Menten equation
D65E
-
large decrease in metal binding affinity
D65N
site-directed mutagenesis, the active site residue mutation does only marginally influence the pH-dependence of fluoride inhibition
D67N
site-directed mutagenesis, the active site residue mutation does only marginally influence the pH-dependence of fluoride inhibition
D70E
-
strongly decreased affinity for diphosphate
D70N
site-directed mutagenesis, the active site residue mutation does only marginally influence the pH-dependence of fluoride inhibition
E145Q
E31A
-
site-directed mutagenesis, the mutant shows a decrease in affinity to the effector site and, as a consequence, kinetics of substrate hydrolysis that do not obey the Michaelis-Menten equation
H110Q
-
catalytic activity unchanged compared to wild type enzyme
H119Q
-
catalytic activity unchanged compared to wild type enzyme
H136Q
H140Q
-
variant can be dissociated in trimers, hydrolytic activity 110% of wild-type enzyme
H60Q
-
catalytic activity unchanged compared to wild type enzyme
K112Q
K112Q/K115A
-
site-directed mutagenesis, the mutant shows altered kinetics and reduced activity compared to the wild-type enzyme
K112Q/K148Q
-
site-directed mutagenesis, the mutant shows altered kinetics and reduced activity compared to the wild-type enzyme
K115A
K148Q
K29R
-
strongly decreased affinity for diphosphate
R43K
-
strongly decreased affinity for diphosphate
Y117F
-
same activity compared to wild type, thermostability as wild type
Y141F
-
22% relative activity compared to wild type enzyme, decreased thermostability compared to wild type
Y16F
-
same activity compared to wild type, thermostability as wild type
Y30F
-
same activity compared to wild type, thermostability as wild type
Y51F
-
64% relative activity compared to wild type enzyme, thermostability as wild type
Y57F
-
same activity compared to wild type, thermostability as wild type
Y77F
-
same activity compared to wild type, thermostability as wild type
S213N
C16S
site-directed mutagenesis, the mutant shows a loss of 50% activity and a reduction in sensitivity to reductants and oxidized glutathione compared to the wild-type enzyme. In addition, the replacement causes a considerable disruption in thermostability, C16S substitution destabilizes PPase through impairing trimer-trimer interactions
D69G
site-directed mutagenesis, inactive mutant
K103A
site-directed mutagenesis, inactive mutant
Y140F
site-directed mutagenesis, the mutant shows 78% reduced activity compared to the wild-type enzyme
D103N
site-directed mutagenesis
D135N
site-directed mutagenesis
D98N
site-directed mutagenesis
Y169A
-
site-directed mutagenesis of the CBS domain residue, the mutant shows altered kinetics with adenine nucleotides compared to the wild-type enzyme
D54N
site-directed mutagenesis, the mutant behaves similar to the wild-type enzyme
D57N
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to wild-type
D89N
site-directed mutagenesis, the mutant shows reduced activity and altered kinetics compared to wild-type
D198N
site-directed mutagenesis, the mutant shows 5fold reduced kcat compared to wild-type
D203N
site-directed mutagenesis, the mutant shows 600fold reduced activity compared to wild-type
D235N
site-directed mutagenesis, the mutant shows 6fold reduced kcat compared to wild-type
K136R
site-directed mutagenesis, the mutant shows a 40fold increased Km for diphosphate compared to wild-type
R158K
site-directed mutagenesis, the mutant shows a moderately altered kcat and Km for diphosphate compared to wild-type
D115E
site-directed mutagenesis, the mutation affects metal binding and the hydrogen bonding network in the active, in contrary to the wild-type enzyme, the mutant shows an open conformation variant of the hitherto unobserved two-phosphate and two bridging water active site, crystal structure determination with bound phosphate and Mg2+, and comparison to the wild-type enzyme structure
D117E
site-directed mutagenesis, crystal structure determination with bound phosphate and Mg2+, and comparison to the wild-type enzyme structure
D120E
site-directed mutagenesis, crystal structure determination with bound phosphate and Mg2+, and comparison to the wild-type enzyme structure
D120N
site-directed mutagenesis, crystal structure determination with bound phosphate and Mg2+, and comparison to the wild-type enzyme structure
D152E
site-directed mutagenesis, crystal structure determination with bound phosphate and Mg2+, and comparison to the wild-type enzyme structure
E48D
site-directed mutagenesis, crystal structure determination with bound phosphate and Mg2+, and comparison to the wild-type enzyme structure
K193R
-
decrease in activity
K56R
-
large decrease in activity
R78K
-
increased activity
R295A
G190A
site-directed mutagenesis, the mutant shows altered kinetic parameters and reduced activity compared to the wild-type enzyme
G190W
site-directed mutagenesis, the mutant shows altered kinetic parameters and reduced activity compared to the wild-type enzyme
I259D
site-directed mutagenesis, almost inactive mutant
I259E
site-directed mutagenesis, almost inactive mutant
I259V
site-directed mutagenesis, the mutant shows 20% reduced activity compared to the wild-type enzyme
I260D
site-directed mutagenesis, the mutant shows 86% reduced activity compared to the wild-type enzyme
I260E
site-directed mutagenesis, the mutant shows 89% reduced activity compared to the wild-type enzyme
I260V
site-directed mutagenesis, the mutant shows 20% increased activity compared to the wild-type enzyme, the mutant is activable by NaF in contrast to the wild-type enzyme
T191G
site-directed mutagenesis, the mutant shows altered kinetic parameters and reduced activity compared to the wild-type enzyme
G190A
-
site-directed mutagenesis, the mutant shows altered kinetic parameters and reduced activity compared to the wild-type enzyme
-
G190W
-
site-directed mutagenesis, the mutant shows altered kinetic parameters and reduced activity compared to the wild-type enzyme
-
I259D
-
site-directed mutagenesis, almost inactive mutant
-
I259E
-
site-directed mutagenesis, almost inactive mutant
-
I259V
-
site-directed mutagenesis, the mutant shows 20% reduced activity compared to the wild-type enzyme
-
I260D
-
site-directed mutagenesis, the mutant shows 86% reduced activity compared to the wild-type enzyme
-
I260E
-
site-directed mutagenesis, the mutant shows 89% reduced activity compared to the wild-type enzyme
-
T191G
-
site-directed mutagenesis, the mutant shows altered kinetic parameters and reduced activity compared to the wild-type enzyme
-
D169A
mutant enzyme shows 1.8% of wild-type pyrophosphatase activity
G163A
mutant enzyme shows 3.1% of wild-type pyrophosphatase activity
H125A
mutant enzyme shows 7.5% of wild-type pyrophosphatase activity
H165A
mutant enzyme shows 0.4% of wild-type pyrophosphatase activity
P103A
mutant enzyme shows 3.3% of wild-type pyrophosphatase activity
P122A
mutant enzyme shows 8.0% of wild-type pyrophosphatase activity
P167A
mutant enzyme shows 1.8% of wild-type pyrophosphatase activity
R159A
mutant enzyme shows 1.1% of wild-type pyrophosphatase activity
S123A
mutant enzyme shows 16% of wild-type pyrophosphatase activity
S158A
mutant enzyme shows 2.0% of wild-type pyrophosphatase activity
D169A
-
mutant enzyme shows 1.8% of wild-type pyrophosphatase activity
-
H125A
-
mutant enzyme shows 7.5% of wild-type pyrophosphatase activity
-
R159A
-
mutant enzyme shows 1.1% of wild-type pyrophosphatase activity
-
S123A
-
mutant enzyme shows 16% of wild-type pyrophosphatase activity
-
S158A
-
mutant enzyme shows 2.0% of wild-type pyrophosphatase activity
-
G119A
the mutant shows less than 50% activity towards diphosphate and increased activity towards ATP compared to the wild type enzyme
G119S
the mutant shows about 140% activity towards diphosphate and increased activity towards ATP and dATP compared to the wild type enzyme
D190A
the Na+ dose dependency of the D190A variant closely resembles that of the wild-type enzyme
D703N
the variant exhibits a much lower slope on the rate vs [Na+] plot than the wild-type enzyme at all of the K+ concentrations examined
E41Q/E42Q
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
E45Q
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
E61Q
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
K118A
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
R97A/R98A
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
D190A
-
the Na+ dose dependency of the D190A variant closely resembles that of the wild-type enzyme
-
D703N
-
the variant exhibits a much lower slope on the rate vs [Na+] plot than the wild-type enzyme at all of the K+ concentrations examined
-
E41Q/E42Q
-
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
-
E45Q
-
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
-
E61Q
-
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
-
K118A
-
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
-
R97A/R98A
-
significant decrease in the nucleoside triphosphate pyrophosphohydrolase activity and concomitant increases in the pyrophosphatase activity
-
A226S
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
A238S
-
site-directed mutagenesis, the mutant shows reduced activity compared to the wild-type enzyme
E225A
-
site-directed mutagenesis, the mutant shows reduced activity compared to the wild-type enzyme
F224A
-
site-directed mutagenesis, the mutant shows slightly increased activity compared to the wild-type enzyme
F240A
-
site-directed mutagenesis, the mutant shows reduced activity compared to the wild-type enzyme
G221A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
G222A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
G229A
-
site-directed mutagenesis, the mutant shows 50% reduced activity compared to the wild-type enzyme
G231A
-
site-directed mutagenesis, the mutant shows 50% reduced activity compared to the wild-type enzyme
G233A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
G234A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
G241A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
I227A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
L223A
-
site-directed mutagenesis, the mutant shows slightly increased activity compared to the wild-type enzyme
L232A
-
site-directed mutagenesis, the mutant shows reduced activity compared to the wild-type enzyme
L239A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
M237A
-
site-directed mutagenesis, the mutant shows reduced activity compared to the wild-type enzyme
R242A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
S235A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
S236A
-
site-directed mutagenesis, the mutant shows slightly reduced activity compared to the wild-type enzyme
T228A
-
site-directed mutagenesis, the mutant shows slightly increased activity compared to the wild-type enzyme
Y230A
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the wild-type enzyme
additional information